plotHeatmapColorScale: Plot Heatmap Color Scale for both caOmicsV bioMatrix and...

In caOmicsV: Visualization of multi-dimentional cancer genomics data

Description

Draw heatmap color scale for legends of bioMatrix plot and bioNetCircos plot. Graphic device must be initialized.

Usage

    plotHeatmapColorScale(coorX, coorY, colorType="BlueWhiteRed", 
        scaleWidth, scaleHeight, minValue, maxValue, direction="h")

Arguments

coorX	numeric, x coordinates for the top left location of color scale
coorY	numeric, y coordinates for the top left location of color scale
scaleWidth	non-negative numeric, width of color scale
scaleHeight	non-negative numeric, height of color scale
colorType	character vector, one of "BlueWhiteRed", "GreenWhiteRed", "GreenYellowRed", "GreenBlackRed", "YellowToRed", and "BlackOnly"
minValue	numeric, the smallest value associated with the lowest coluor
maxValue	numeric, the biggest value associated with the highest coluor
direction	One character, either "h" for horizontal or "v" for vertical

Value

None

Author(s)

Henry Zhang

Examples

    plot.new()
    plot.window(xlim=c(1,5), ylim=c(1,5))
    axis(1)
    axis(2)
    plotHeatmapColorScale(coorX=2, coorY=4, colorType="BlueWhiteRed", 
        scaleWidth=2, scaleHeight=0.5, minValue=-3, maxValue=3)

Example output

Loading required package: igraph

Attaching package: 'igraph'

The following objects are masked from 'package:stats':

    decompose, spectrum

The following object is masked from 'package:base':

    union

Loading required package: bc3net
Loading required package: c3net
Loading required package: infotheo
Loading required package: Matrix
Loading required package: lattice

caOmicsV documentation built on Nov. 8, 2020, 8:23 p.m.