deltaWCalculatorVariousWindows: Calculate deltaWs using various window sizes

In breakpointR: Find breakpoints in Strand-seq data

Description

This function will calculate deltaWs from a GRanges-class object with read fragments.

Usage

deltaWCalculatorVariousWindows(
  frags,
  reads.per.window = 100,
  multi.sizes = c(2, 4, 6)
)

Arguments

frags	A GRanges-class with read fragments (see readBamFileAsGRanges).
reads.per.window	Number of reads in each dynamic window.
multi.sizes	User defined multiplications of the original window size.

Value

The input frags with additional meta-data columns.

Author(s)

David Porubsky

See Also

deltaWCalculator

breakpointR documentation built on Nov. 8, 2020, 8:04 p.m.