colorBlindSafePal: Color blind safe palette generator
In biovizBase: Basic graphic utilities for visualization of genomic data.

Description Usage Arguments Details Value Author(s) Examples

This function help users create a function based on specified color blind safe palette. And the returned function could be used for color generation.

genDichromatPalInfo()
genBrewerBlindPalInfo()
genBlindPalInfo()
colorBlindSafePal(palette)
blind.pal.info
brewer.pal.blind.info
dichromat.pal.blind.info

palette

A index numeric value or character. Please see blind.pal.info, the palette could be "pal_id" or names the row in which users could specify the palette you want to use.

We get those color-blind safe palette based on http://colorbrewer2.org/ and http://geography.uoregon.edu/datagraphics/color_scales.htm those color are implemented in two packages, RColorBrewer and dichromat. But RColorBrewer doesn't provide subset of color-blind safe palette info. And dichromat doesn't group color based on "quality", "sequential" and "divergent", so we pick those color manually and create a combined palette, blind.pal.info.

colorBlindSafePal will return a function, this function will take two arguments, n and repeatable. if n is smaller than 3(n >= 3 is required by RColorBrewer), we use 3 instead and return a color vector. If n is over the maxcolors column in blind.pal.info, we use maxcolors instead when repeatable set to FALSE, if repeatable set to TRUE we repeat the color of all the allowed colors(length equals maxcolors) in the same order. This has special case in certain graphics which is always displayed side by side and don't worry about the repeated colors being neighbors.

genBrewerBlindPalInfo return brewer.pal.blind.info data frame containing all color-blind safe palettes from brewer.pal.info defined in RColorBrewer, but it's not only just subset of it, it also changes some maxcolors info.

genDichromatPalInfo return dichromat.pal.blind.info data frame.

genBlindPalInfo return blind.pal.info data frame.

A color generating function with arguments n and repeatable. n specifying how many different discrete colors you want to get from them palette, and if repeatable turned on and set to TRUE, you can specify n even larger than maximum color. The color will be repeated following the same order.

Tengfei Yin

## Not run: 
library(scales)
## brewer subse of only color blind palette
brewer.pal.blind.info
genBrewerBlindPalInfo()
## dichromat info
dichromat.pal.blind.info
genDichromatPalInfo()
## all color blind palette, adding id/pkg.
blind.pal.info
## with no parameters, just return blind.pal.info
colorBlindSafePal()
mypal <- colorBlindSafePal(20)
## or pass character name
mypal <- colorBlindSafePal("Set2")
mypal12 <- colorBlindSafePal(22)
show_col(mypal(12, repeatable = FALSE)) # warning
show_col(mypal(11, repeatable = TRUE))  # no warning, and repeat
show_col(mypal12(12))

## End(Not run)