use_bioc_github_action: Create a biocthis-style GitHub Actions workflow
In biocthis: Automate package and project setup for Bioconductor packages

Description Usage Arguments Details Value Examples

This function is very similar to usethis::use_github_action() except that it uses a template from biocthis. It creates a Bioconductor-friendly GitHub action workflow for your package. You can also use this GitHub Actions workflow by executing usethis::use_github_action().

use_bioc_github_action(
  biocdocker,
  pkgdown = getOption("biocthis.pkgdown", FALSE),
  testthat = getOption("biocthis.testthat", FALSE),
  covr = testthat,
  RUnit = getOption("biocthis.RUnit", FALSE),
  pkgdown_covr_branch = getOption("biocthis.pkgdown_covr_branch", "master"),
  docker = getOption("biocthis.docker", FALSE)
)

`biocdocker`	A `character(1)` specifying the Bioconductor docker version you want to use. Valid names are `"devel"` or in the `"RELEASE_X_Y"` format such as `"RELEASE_3_11"`. Check http://bioconductor.org/help/docker/ for more information on the Bioconductor docker images. If you don't specify this, it will be determined automatically using your current Bioconductor version. The R version will be set to match the Bioconductor version.
`pkgdown`	A `logical(1)` specifying whether to run `pkgdown`. Check https://cran.r-project.org/web/packages/pkgdown/index.html for more information on `pkgdown` which is useful for creating documentation websites. If `TRUE`, then `pkgdown` will only run on the Linux (Bioconductor docker) test.
`testthat`	A `logical(1)` specifying whether to run `testthat`. Check https://cran.r-project.org/web/packages/testthat/index.html for more information about `testthat` which is useful for unit tests. The testing chapter at https://r-pkgs.org/tests.html is also very useful.
`covr`	A `logical(1)` specifying whether to run `covr`. Check https://cran.r-project.org/web/packages/covr/index.html for more information about `covr`, which is useful for displaying for assessing your test coverage. If `TRUE`, then `covr` will only run on the Linux (Bioconductor docker) test.
`RUnit`	A `logical(1)` specifying whether to run `RUnit` unit tests. Check http://bioconductor.org/developers/how-to/unitTesting-guidelines/ for more information about `RUnit`.
`pkgdown_covr_branch`	A `character(1)` specifying the name of the GitHub branch that will be used creating the `pkgdown` website and running `covr`.
`docker`	A `logical(1)` specifying whether to build a docker image with the resulting package.

For the full history on how this GitHub Actions workflow came to be, check the "biocthis developer notes" vignette https://lcolladotor.github.io/biocthis/articles/biocthis_dev_notes.html.

This function adds and/or replaces the .github/workflows/check-bioc.yml file in your R package.

## Not run: 
## Run this function in your package
biocthis::use_bioc_github_action()

## End(Not run)

## I have the following options on my ~/.Rprofile set
## Check
## <https://github.com/lcolladotor/biocthis/issues/9#issuecomment-702401032>
## for more information.
options("biocthis.pkgdown" = TRUE)
options("biocthis.testthat" = TRUE)