R/data-soybean_ir_sub_metrics.R

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#' Raw and subsetted soybean leaves iron-metabolism metrics
#'
#' @name soybean_ir_sub_metrics
#' @title Raw and subsetted soybean leaves iron-metabolism metrics
#' @description This data contains metrics for raw RNA-sequencing read counts
#' from a soybean dataset that compared leaves that were exposed to iron-rich
#' (iron-postive) soil conditions versus leaves that were exposed to iron
#' -poor (iron-negative) soil conditions. The data was collected 120 minutes 
#' after iron conditions were initiated. The metrics include the log fold 
#' change and the p-values for all genes and all pairwise combinations of 
#' treatment groups. To save on size, this example dataset was generated by 
#' obtaining a random subset of 1 out of 10 genes from the original resource.
#' @docType data
#' @format a \code{RData} instance, 1 list per treatment group combination 
#' and 1 row per gene 
#' @details \itemize{
    #' \item ID gene name
    #' \item logFC log fold change
    #' \item PValue p-value
    #' }
#' @docType data
#' @keywords datasets
#' @usage data(soybean_ir_sub_metrics)
#' @format A nested list of length 1. The list contains the metrics for the 
#' 5,604 genes for the one treatment group combination.
#' @seealso \code{\link{soybean_ir_sub}} for information about the treatment 
#' groups
#' @references
#' Moran Lauter AN, Graham MA. NCBI SRA bioproject accession: PRJNA318409.
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