soybean_cn: Normalized soybean cotyledon data

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Description

This dataset contains normalized RNA-sequencing read counts from soybean cotyledon across three time stages of development. Early stage cotyledons were collected four days after planting and were green but closed. Middle stage cotyledons were collected while green and open, soon after the plant generated its first set of unifoliate leaves. Late stage cotyledons were collected immediately after the initiation of yellowing and shrinking.

Format

a RData instance, 1 row per gene

A data frame with 73,320 rows and 10 variables

Details

Normalized soybean cotyledon data

• ID gene name

• S1.1 early stage replicate 1 normalized read counts

• S1.2 early stage replicate 2 normalized read counts

• S1.3 early stage replicate 3 normalized read counts

• S2.1 middle stage replicate 1 normalized read counts

• S2.2 middle stage replicate 2 normalized read counts

• S2.3 middle stage replicate 3 normalized read counts

• S3.1 late stage replicate 1 normalized read counts

• S3.2 late stage replicate 2 normalized read counts

• S3.3 late stage replicate 3 normalized read counts

References

Brown AV, Hudson KA (2015) Developmental profiling of gene expression in soybean trifoliate leaves and cotyledons. BMC Plant Biol 15:169

bigPint documentation built on Nov. 8, 2020, 5:07 p.m.