dispEst: Function to access the dispersion estimation for each gene
In XBSeq: Test for differential expression for RNA-seq data

Description Usage Arguments Value Author(s) References See Also Examples

The dispersion estimated for each gene are stored as a data.frame after user called estimateSCV

1 2	dispEst(object, varname = NA) dispEst(object, varname = NA) <- value

`object`	XBSeqDataSet object
`varname`	variable name of dispersion estimates
`value`	The dispersion estimates for each gene

A data.frame which contains the dispersion estimates for each gene

Yuanhang Liu

H. I. Chen, Y. Liu, Y. Zou, Z. Lai, D. Sarkar, Y. Huang, et al., "Differential expression analysis of RNA sequencing data by incorporating non-exonic mapped reads," BMC Genomics, vol. 16 Suppl 7, p. S14, Jun 11 2015.

estimateSCV, dispTable, XBSeqDataSet

   conditions <- factor(c(rep('C1', 3), rep('C2', 3)))
   data(ExampleData)
   XB <- XBSeqDataSet(Observed, Background, conditions)
   XB <- estimateRealCount(XB)
   XB <- estimateSizeFactors(XB)
   XB <- estimateSCV(XB, fitType='local')
   str(dispEst(XB))