checkTSetStructure: A function to verify the structure of a ToxicoSet

In ToxicoGx: Analysis of Large-Scale Toxico-Genomic Data

Description

This function checks the structure of a ToxicoSet, ensuring that the correct annotations are in place and all the required slots are filled so that matching of cells and drugs can be properly done across different types of data and with other studies.

Usage

checkTSetStructure(tSet, plotDist = FALSE, result.dir = ".")

Arguments

tSet	A ToxicoSet object
plotDist	Should the function also plot the distribution of molecular data?
result.dir	The path to the directory for saving the plots as a string, defaults to 'tempdir()'

Value

Prints out messages whenever describing the errors found in the structure of the pset object passed in.

Examples

checkTSetStructure(TGGATESsmall)

ToxicoGx documentation built on Nov. 19, 2020, 2 a.m.