Files in ToxicoGx

Analysis of Large-Scale Toxico-Genomic Data

NEWS.md README.md R/methods-pertNumber.R R/allGenerics.R R/drugGeneResponseCurve.R R/paramMissingHandler.R R/methods-sensNumber.R R/methods-cellInfo.R R/methods-drugNames.R R/methods-subsetTo.R R/geneDrugSensitivity.R R/geneDrugPerturbation.R R/methods-molecularProfilesSlot.R R/methods-name.R R/summarizeSensitivityProfiles.R R/computeAUC.R R/methods-drugInfo.R R/updateDrugId.R R/methods-dateCreated.R R/methods-featureInfo.R R/paramErrorChecker.R R/methods-fNames.R R/methods-datasetType.R R/drugTimeResponseCurve.R R/paramMissingHandlerTests.R R/methods-sensitivityMeasures.R R/class-ToxicoSet.R R/methods-molecularProfiles.R R/downloadTSet.R R/methods-sensitivityProfiles.R R/methods-phenoInfo.R R/utilities.R R/rankGeneDrugPerturbation.R R/summarizeMolecularProfiles.R R/columnsAsCharacter.R R/dataset.R R/drugPerturbationSig.R R/globals.R R/methods-sensitivitySlot.R R/methods-curation.R R/SanityCheck.R R/methods-annotation.R R/methods-mDataNames.R R/computeDrugSensitivity.R R/updateCellId.R R/class-signature.R R/computeICn.R R/zzz.R R/LogLogisticRegression.R R/methods-sensitivityInfo.R R/computeIC50.R R/methods-computeLimmaDiffExpr.R R/methods-cellNames.R R/methods-sensitivityRaw.R R/rankGeneDrugSensitivity.R man/drugNames-set.Rd man/sub-ToxicoSet-ANY-ANY-ANY-method.Rd man/annotation-set.Rd man/sensitivitySlot-set.Rd man/dim-ToxicoSet-method.Rd man/curation.Rd man/summarizeMolecularProfiles.Rd man/mDataNames-ToxicoSet-method.Rd man/computeLimmaDiffExpr-ToxicoSet-method.Rd man/HCC_sig.Rd man/show-ToxicoSig-method.Rd man/ToxicoSet.Rd man/computeICn.Rd man/drugInfo-set.Rd man/drugNames.Rd man/summarizeSensitivityProfiles.Rd man/computeAUC.Rd man/showSigAnnot.Rd man/show-ToxicoSet-method.Rd man/datasetType.Rd man/TGGATESsmall.Rd man/sensitivityRaw.Rd man/subsetTo.Rd man/annotation.Rd man/availableTSets.Rd man/updateDrugId.Rd man/checkTSetStructure.Rd man/drugTimeResponseCurve.Rd man/ToxicoSet-class.Rd man/computeLimmaDiffExpr.Rd man/datasetType-set.Rd man/geneDrugPerturbation.Rd man/drugInfo.Rd man/ToxicoSig.Rd man/name-ToxicoSet-method.Rd man/sensitivitySlot.Rd man/logLogisticRegression.Rd man/drugGeneResponseCurve.Rd man/sensitivityRaw-set.Rd man/downloadTSet.Rd man/drugPerturbationSig.Rd man/updateCellId.Rd man/curation-set.Rd inst/doc/toxicoGxCaseStudies.Rmd inst/doc/toxicoGxCaseStudies.R vignettes/toxicoGxCaseStudies.Rmd