getCandidates-NullFilter-method: Get candidate genes using the null filter

In TReNA: Fit transcriptional regulatory networks using gene expression, priors, machine learning

Description

Get candidate genes using the null filter

Usage

## S4 method for signature 'NullFilter'
getCandidates(obj, extraArgs = list())

Arguments

obj	An object of class NullFilter
extraArgs	An empty list

Value

A vector containing all genes in the assay matrix

See Also

NullFilter

Other getCandidate Methods: getCandidates,FootprintFilter-method, getCandidates,VarianceFilter-method, getCandidates

Examples

# Using the included Alzheimer's data, return all transcription factors as candidates
load(system.file(package="TReNA", "extdata/ampAD.154genes.mef2cTFs.278samples.RData"))
null.filter <- NullFilter(mtx.assay=mtx.sub)
tfs <- getCandidates(null.filter)

TReNA documentation built on Nov. 17, 2017, 12:35 p.m.