IUPAC2Matrix: IUPAC2Matrix
In TFBSTools: Software Package for Transcription Factor Binding Site (TFBS) Analysis
Description
Usage
Arguments
Details
Value
Author(s)
Examples
Description
Convert a IUPAC string into a Postion Weight Matirx
Usage
1
IUPAC2Matrix(x)
Arguments
x
The IUPAC string.
Details
The mapping between IUPAC Extended Genetic Alphabet and the DNA bases letters
are from IUPAC_CODE_MAP in Biostrings package.
Value
A matrix with position weight.
Author(s)
Ge Tan
Examples
1
2
x <- "RMGNV"
IUPAC2Matrix(x)
TFBSTools documentation built on Nov. 8, 2020, 8:14 p.m.
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Description Usage Arguments Details Value Author(s) Examples
Description
Convert a IUPAC string into a Postion Weight Matirx
Usage
1 | IUPAC2Matrix(x)
|
Arguments
x |
The IUPAC string. |
Details
The mapping between IUPAC Extended Genetic Alphabet and the DNA bases letters
are from IUPAC_CODE_MAP in Biostrings package.
Value
A matrix with position weight.
Author(s)
Ge Tan
Examples
1 2 | x <- "RMGNV"
IUPAC2Matrix(x)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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