TCGAanalyze_Pathview: Generate pathview graph
In TCGAbiolinks: TCGAbiolinks: An R/Bioconductor package for integrative analysis with GDC data
Description
Usage
Arguments
Value
Examples
Description
TCGAanalyze_Pathview pathway based data integration and visualization.
Usage
1
TCGAanalyze_Pathview(dataDEGs, pathwayKEGG = "hsa05200")
Arguments
dataDEGs
dataDEGs
pathwayKEGG
pathwayKEGG
Value
an adjacent matrix
Examples
1
2
3
4
5
## Not run:
dataDEGs <- data.frame(mRNA = c("TP53","TP63","TP73"), logFC = c(1,2,3))
TCGAanalyze_Pathview(dataDEGs)
## End(Not run)
TCGAbiolinks documentation built on Nov. 8, 2020, 5:37 p.m.
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Description Usage Arguments Value Examples
Description
TCGAanalyze_Pathview pathway based data integration and visualization.
Usage
1 | TCGAanalyze_Pathview(dataDEGs, pathwayKEGG = "hsa05200")
|
Arguments
dataDEGs |
dataDEGs |
pathwayKEGG |
pathwayKEGG |
Value
an adjacent matrix
Examples
1 2 3 4 5 | ## Not run:
dataDEGs <- data.frame(mRNA = c("TP53","TP63","TP73"), logFC = c(1,2,3))
TCGAanalyze_Pathview(dataDEGs)
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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