TCGAanalyze_DEA_Affy: Differentially expression analysis (DEA) using limma package.

In TCGAbiolinks: TCGAbiolinks: An R/Bioconductor package for integrative analysis with GDC data

Description

Differentially expression analysis (DEA) using limma package.

Usage

TCGAanalyze_DEA_Affy(AffySet, FC.cut = 0.01)

Arguments

AffySet	A matrix-like data object containing log-ratios or log-expression values for a series of arrays, with rows corresponding to genes and columns to samples
FC.cut	write

Value

List of list with tables in 2 by 2 comparison of the top-ranked genes from a linear model fitted by DEA's limma

Examples

## Not run: 
to add example

## End(Not run)

TCGAbiolinks documentation built on Nov. 8, 2020, 5:37 p.m.