README.md

In TBSignatureProfiler: Profile RA-Seq Data Using TB Pathway Signatures

TBSignatureProfiler

Documentation

Please check our website at https://compbiomed.github.io/TBSignatureProfiler-docs/.

What is the TBSignatureProfiler?

The TBSignatureProfiler is an R package that allows researchers to easily profile RNA-seq data using signatures for TB progression, TB disease, and other TB disease states, using common signature profiling tools including ASSIGN, GSVA, and ssGSEA.

Installation

The TBSignatureProfiler requires R 4.0 and Bioconductor 3.10.

• Install the development version of the package from Github

if (!requireNamespace("devtools", quietly=TRUE))
  install.packages("devtools")
devtools::install_github("compbiomed/TBSignatureProfiler")

• Install the release version of the package from Bioconductor

if (!requireNamespace("BiocManager", quietly=TRUE))
  install.packages("BiocManager")
BiocManager::install("TBSignatureProfiler")

TBSignatureProfiler documentation built on Nov. 8, 2020, 6:56 p.m.