termcnt: Term Count Data

In SemDist: Information Accretion-based Function Predictor Evaluation

Description

This data set contains the term count values for each term in the requested ontology/species (the number of times that the term annotates a protein). This can be used along with the parent count to calculate information accretion.

Usage

termcnt

Format

A named numeric vector with one value corresponding to each GO accession in the ontology.

Source

The gene ontology data was obtained from the GO.db package and the annotation data was obtained from the following packages for each organism:

anopheles = org.Ag.eg.db

arabidopsis = org.At.tair.db

bovine = org.Bt.eg.db

canine = org.Cf.eg.db

chicken = org.Gg.eg.db

chimp = org.Pt.eg.db

ecolik12 = org.EcK12.eg.db

fly = org.Dm.eg.db

human = org.Hs.eg.db

malaria = org.Pf.plasmo.db

mouse = org.Mm.eg.db

pig = org.Ss.eg.db

rat = org.Rn.eg.db

rhesus = org.Mmu.eg.db

worm = org.Ce.eg.db

xenopus = org.Xl.eg.db

yeast = org.Sc.sgd.db

zebrafish = org.Dr.eg.db

Examples

data("Term_Count_mouse_CC", package = "SemDist")
str(termcnt)

SemDist documentation built on Nov. 8, 2020, 8:27 p.m.