pvs.adj: Accessor for the 'pvs.adj' slot of a 'svplsTest' object

In SVAPLSseq: SVAPLSseq-An R package to estimate the hidden factors of unwanted variability and adjust for them to enable a more powerful and accurate differential expression analysis based on RNAseq data

Description

Accessor for the 'pvs.adj' slot of a 'svplsTest' object

Usage

pvs.adj(object)

## S4 method for signature 'svplsTest'
pvs.adj(object)

Arguments

object

a svplsTest object

Examples

data(sim.dat)
group = as.factor(c(rep(1, 10), rep(-1, 10)))
sv = svplsSurr(sim.dat, group, surr.select = "automatic")
surr = surr(sv)
fit = svplsTest(dat = sim.dat, group = group, surr = surr, normalization = "TMM", test = "t-test")
pvs.adj(fit)

SVAPLSseq documentation built on April 28, 2020, 6:30 p.m.