DICE: DICE
In SMAD: Statistical Modelling of AP-MS Data (SMAD)
Description
Usage
Arguments
Value
Author(s)
References
Examples
Description
DICE
The Dice coefficient is used to score the interaction affinity between two proteins.
Usage
1
DICE(datInput)
Arguments
datInput
A dataframe with column names: idRun, idPrey.
Each row represent one unique protein captured in one pull-down
experiment.
Value
A dataframe consists of pairwise combindation of preys identified in
the input with DICE scores.
Author(s)
Qingzhou Zhang, zqzneptune@hotmail.com
References
Bing Zhang et al., From pull-down data to protein interaction
networks and complexes with biological relevance, Bioinformatics,
Volume 24, Issue 7, 1 April 2008, Pages 979<e2><80><93>986,
https://doi.org/10.1093/bioinformatics/btn036
Examples
1
2
3
data(TestDatInput)
datScore <- DICE(TestDatInput)
head(datScore)
SMAD documentation built on Nov. 8, 2020, 8:24 p.m.
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Description Usage Arguments Value Author(s) References Examples
Description
DICE The Dice coefficient is used to score the interaction affinity between two proteins.
Usage
1 | DICE(datInput)
|
Arguments
datInput |
A dataframe with column names: idRun, idPrey. Each row represent one unique protein captured in one pull-down experiment. |
Value
A dataframe consists of pairwise combindation of preys identified in the input with DICE scores.
Author(s)
Qingzhou Zhang, zqzneptune@hotmail.com
References
Bing Zhang et al., From pull-down data to protein interaction networks and complexes with biological relevance, Bioinformatics, Volume 24, Issue 7, 1 April 2008, Pages 979<e2><80><93>986, https://doi.org/10.1093/bioinformatics/btn036
Examples
1 2 3 | data(TestDatInput)
datScore <- DICE(TestDatInput)
head(datScore)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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