CIMLR_Estimate_Number_of_Clusters: This function has been removed and it is now provided by the...

In SIMLR: Single-cell Interpretation via Multi-kernel LeaRning (SIMLR)

Description

CIMLR_Estimate_Number_of_Clusters

Usage

CIMLR_Estimate_Number_of_Clusters(all_data, NUMC = 2:5, cores.ratio = 1)

Arguments

all_data	is a list of multi-omic data each of which is an (m x n) data matrix of measurements of cancer patients
NUMC	vector of number of clusters to be considered
cores.ratio	ratio of the number of cores to be used when computing the multi-kernel

Value

a list of 2 elements: K1 and K2 with an estimation of the best clusters (the lower values the better) as discussed in the original paper of SIMLR

Examples

   
## Not run:     
CIMLR_Estimate_Number_of_Clusters(GliomasReduced$in_X,   
   NUMC = 2:5,   
   cores.ratio = 0)  

## End(Not run)

SIMLR documentation built on Nov. 8, 2020, 5:40 p.m.