getScore: Calculate similarity score for a peak
In SIMAT: GC-SIM-MS data processing and alaysis tool

Description Usage Arguments Details Value Author(s) References See Also Examples

This function calculates and output the similarity score for a peak while a reference spectrum is provided. The score is based on spectral matching and RI difference between the true peak and the reference.

1 2	getScore(trueSpec = numeric(), refSpec = numeric(), trueRI = 0, refRI = 0, deltaRI = 30)

`trueSpec`	a numeric vector of intensity values for the measure, i.e. true, spectrum.
`refSpec`	a numeric vector of the intensity values for the reference spectrum.
`trueRI`	a numeric value of the measured, i.e. true, retention index
`refRI`	a numeric value of the reference retention index
`deltaRI`	a numeric value for the penalty on the retention index similarity score

By calling getScore(), this function calculates the similarity score for multiple peaks in multiple runs. This is performed by using spectral and retention index information together.

numeric

Mo R. Nezami Ranjbar

http://omics.georgetown.edu/SIMAT.html

getPeakScore