sim.update.chrom.table: Update the chromomosome table
In SIM: Integrated Analysis on two human genomic datasets

Description Usage Arguments Details Value Author(s) References See Also Examples

A function to update the genomic positions of chromosome arms. Base locations of the start and end of chromosome arms should be used from the same organism and build of genome as the location provided as annotation with the datasets.

1	sim.update.chrom.table(db = "homo_sapiens_core_40_36b")

`db`	database name

This functions requires library RMySQL. Currently SIM only supports integrated analysis on the human genome without mitochondrial DNA.

Chromosome table chrom.table.

Marten Boetzer, Renee X. de Menezes R.X.Menezes@lumc.nl

http://www.ensembl.org/info/data/mysql.html

SIM, chrom.table

1 2	#youn need internet connection for this! #sim.update.chrom.table(db = "homo_sapiens_core_40_36b")

Loading required package: quantreg
Loading required package: SparseM

Attaching package: 'SparseM'

The following object is masked from 'package:base':

    backsolve