API for SIM
Integrated Analysis on two human genomic datasets
| Global functions | |
|---|---|
| .onAttach | Source code |
| Bases | Source code |
| RESOURCERER.annotation.to.ID | Man page |
| SIM | Man page |
| SIM-package | Man page |
| `RESOURCERER.annotation.to.ID` | Source code |
| acgh.data | Man page |
| assemble.data | Man page Source code |
| checkFiles | Source code |
| chrom.table | Man page |
| colourKey | Source code |
| convertGenomicRegion | Source code |
| dependent.heatmap | Source code |
| expr.data | Man page |
| findConsecutive | Source code |
| findStretch | Source code |
| findWindow | Source code |
| getGenomicRegion | Source code |
| getoverlappingregions | Man page Source code |
| heatmap | Source code |
| impute.nas.by.surrounding | Man page Source code |
| independent.heatmap | Source code |
| integrated.analysis | Man page |
| link.metadata | Man page Source code |
| plotCytobands | Source code |
| predefinedRegions | Source code |
| quantsmooth.plot | Source code |
| runIA | Source code |
| samples | Man page |
| showProgress | Source code |
| sim.plot.overlapping.indep.dep.features | Man page Source code |
| sim.plot.pvals.on.genome | Man page Source code |
| sim.plot.pvals.on.region | Man page Source code |
| sim.plot.zoom.in | Man page Source code |
| sim.plot.zscore.heatmap | Man page Source code |
| sim.update.chrom.table | Man page Source code |
| tabulate.pvals | Man page Source code |
| tabulate.top.dep.features | Man page Source code |
| tabulate.top.indep.features | Man page Source code |
| validColumn | Source code |
| weightMatrix | Source code |
| withinWindow | Source code |
