Files in SCOPE
A normalization and copy number estimation method for single-cell DNA sequencing
README.md
SCOPE documentation built on Nov. 8, 2020, 5:27 p.m.
NEWS
NAMESPACE
DESCRIPTION
build/vignette.rds
data/coverageObj.scopeDemo.rda
data/ref.scopeDemo.rda
data/normObj.scopeDemo.rda
data/demo.rda
data/QCmetric.scopeDemo.rda
data/iCN_sim.rda
R/get_gini.R
R/segment_CBScs.R
R/get_mapp.R
R/get_bam_bed.R
R/get_samp_QC.R
R/initialize_ploidy.R
R/normalize_codex2_ns_noK.R
R/normalize_scope.R
R/normalize_scope_group.R
R/normalize_scope_foreach.R
R/initialize_ploidy_group.R
R/get_coverage_scDNA.R
R/plot_EM_fit.R
R/data.R
R/get_gc.R
R/plot_iCN.R
R/perform_qc.R
vignettes/SCOPE_vignette.Rmd
man/get_bam_bed.Rd
man/get_mapp.Rd
man/plot_iCN.Rd
man/iCN_sim.Rd
man/get_gc.Rd
man/plot_EM_fit.Rd
man/get_samp_QC.Rd
man/normalize_scope_foreach.Rd
man/normalize_scope_group.Rd
man/normalize_scope.Rd
man/normalize_codex2_ns_noK.Rd
man/normObj.scopeDemo.Rd
man/coverageObj.scopeDemo.Rd
man/Y_sim.Rd
man/get_gini.Rd
man/ref_sim.Rd
man/segment_CBScs.Rd
man/QCmetric.scopeDemo.Rd
man/perform_qc.Rd
man/get_coverage_scDNA.Rd
man/ref.scopeDemo.Rd
man/initialize_ploidy.Rd
man/initialize_ploidy_group.Rd
tests/testthat.R
tests/testthat/test_get_gini.R
tests/testthat/test_initialize_ploidy.R
tests/testthat/test_normalize_scope.R
tests/testthat/test_segment_CBScs.R
tests/testthat/test_get_bam_bed.R
inst/doc/SCOPE_vignette.R
inst/doc/SCOPE_vignette.Rmd
inst/doc/SCOPE_vignette.html
inst/docs/split_script.py
