README.md

In RcwlPipelines: Bioinformatics pipelines based on Rcwl

RcwlPipelines

A collection of Bioinformatics pipeline recipes based on Rcwl.

Pipeline examples

• RNASeq alignment, QC and quantification pipeline

• DNASeq alignment

• TCGA MC3 pipeline for Somatic calling

• GATK4 pipeline for Germline calling

• cwlParam to Shiny App

RcwlPipelines documentation built on March 7, 2021, 2 a.m.