Files in Rcade
R-based analysis of ChIP-seq And Differential Expression - a tool for integrating a count-based ChIP-seq analysis with differential expression summary data
TODO
.BBSoptions
NEWS
NAMESPACE
DESCRIPTION
README
build/vignette.rds
data/datalist
data/RcadeSTAT1.rda
R/RcadeAnalysis.R
R/diffCountsBaySeq.R
R/aaa.R
R/constructRcadeTable.R
R/AllGenerics.R
R/countReads.R
R/RcadeTrack-Methods.R
R/defineBins.R
R/checkTargets.R
R/zzz.R
R/sanitizeDElookup.R
R/AllClasses.R
R/Rcade-OutputMethods.R
R/Rcade-PlotMethods.R
R/Rcade-Methods.R
vignettes/plotBBB.png
vignettes/Rcade.Rnw
man/constructRcadeTable.Rd
man/Rcade-class.Rd
man/exportRcade-methods.Rd
man/diffCountsBaySeq.Rd
man/RcadeTrack-class.Rd
man/RcadeAnalysis.Rd
man/countReads.Rd
man/defineBins.Rd
man/RcadeSTAT1.Rd
tests/runTests.R
inst/CITATION
inst/doc/Rcade.R
inst/doc/Rcade.Rnw
inst/doc/Rcade.pdf
inst/extdata/STAT1/wgEncodeSydhTfbsHelas3InputIfng30StdAlnRep1.bam
inst/extdata/STAT1/wgEncodeSydhTfbsHelas3Stat1Ifng30StdAlnRep1.bam.bai
inst/extdata/STAT1/wgEncodeSydhTfbsHelas3InputStdAlnRep1.bam
inst/extdata/STAT1/anno.csv
inst/extdata/STAT1/wgEncodeSydhTfbsHelas3Stat1Ifng30StdAlnRep2.bam
inst/extdata/STAT1/wgEncodeSydhTfbsHelas3InputIfng30StdAlnRep1.bam.bai
inst/extdata/STAT1/wgEncodeSydhTfbsHelas3Stat1Ifng30StdAlnRep1.bam
inst/extdata/STAT1/wgEncodeSydhTfbsHelas3Stat1Ifng30StdAlnRep2.bam.bai
inst/extdata/STAT1/wgEncodeSydhTfbsHelas3InputStdAlnRep1.bam.bai
inst/extdata/STAT1/DE.csv
inst/extdata/STAT1/targets.csv
inst/unitTests/test_modules.R
