golub: A subset of the Gene expression dataset from Golub et al....

In RankProd: Rank Product method for identifying differentially expressed genes with application in meta-analysis

Description

Gene expression data (500 genes and 38 tumor mRNA samples) from the leukemia microarray study of Golub et al. (1999). The original dataset contains 3051 genes

Usage

data(golub)

Value

golub	matrix of gene expression levels for the 38 tumor mRNA samples. Rows correspond to genes and columns to mRNA samples.
golub.cl	numeric vector encoding the tumor classes, 27 acute lymphoblastic leukemia (ALL) cases (code 0) and 11 acute myeloid leukemia (AML) cases (code 1).
golub.gnames	a matrix containing the names of the 500 genes for the expression matrix golub. The three columns correspond to the gene index, ID, and Name, respectively.

Source

Golub et al. (1999). Molecular classification of cancer: class discovery and class prediction by gene expression monitoring, Science, Vol. 286:531-537.
http://www-genome.wi.mit.edu/MPR/ .

References

S. Dudoit, J. Fridlyand, and T. P. Speed (2002). Comparison of discrimination methods for the classification of tumors using gene expression data. Journal of the American Statistical Association, Vol. 97, No. 457, p. 77–87.

RankProd documentation built on Nov. 8, 2020, 8 p.m.