API for RVS
Computes estimates of the probability of related individuals sharing a rare variant
| Global functions | |
|---|---|
| ComputeKinshipPropCeof | Man page |
| ComputeKinshipPropCoef | Man page |
| ComputeKinshipPropCoef,pedigree-method | Man page |
| GeneDrop | Man page Source code |
| GeneDropSim.allsubsets.fn | Man page |
| GeneDropSim.fn | Man page |
| GeneDropSimExcessSharing.fn | Man page |
| RVS | Man page |
| RVgene | Man page Source code |
| RVsharing | Man page |
| RVsharing,list-method | Man page |
| RVsharing,pedigree-method | Man page |
| SnpMatrixToCount | Man page Source code |
| ancestorDistance | Man page Source code |
| areMating | Man page Source code |
| checkArgs | Man page Source code |
| computePFU | Man page Source code |
| computePhiVec | Man page Source code |
| convertMatrix | Man page Source code |
| createNetwork | Man page Source code |
| denomProb | Man page Source code |
| enrichmentPValue | Man page Source code |
| enrichmentPValue_R_Backend | Man page Source code |
| ex.ped.mat | Man page |
| exactSharingProb | Man page Source code |
| extract_carriers | Man page Source code |
| fam15157.vcf | Man page |
| fam28003.vcf | Man page |
| founderOccurence | Man page Source code |
| get.psubset | Man page Source code |
| inferNumAlleles | Man page Source code |
| inferTheta | Man page Source code |
| isDescendant | Man page Source code |
| marginalProb | Man page Source code |
| monteCarloSharingProb | Man page Source code |
| multipleFamilyPValue | Man page Source code |
| multipleFamilyPValue_R_Backend | Man page Source code |
| multipleVariantPValue | Man page Source code |
| multipleVariantPValue_R_Backend | Man page Source code |
| numerProb | Man page Source code |
| numerProbSet | Source code |
| oldArgs | Man page Source code |
| oneFounderSharingProb | Man page Source code |
| oneFounderSharingProbSplitting | Man page Source code |
| ped2trio | Man page Source code |
| processPedigree | Man page |
| processPedigree,pedigree-method | Man page |
| relatedFoundersCorrection | Man page Source code |
| runMonteCarlo | Man page Source code |
| samplePedigrees | Man page |
| simulatePedigree | Man page Source code |
| snpMat | Man page |
| stackCreate | Source code |
| stackGetBack | Source code |
| stackIsEmpty | Source code |
| stackPopBack | Source code |
| stackPushBack | Source code |
| sumBranches | Source code |
| twoFounderSharingProb | Man page Source code |
