infoTCGA: Information about cohorts from TCGA project

In RTCGA: The Cancer Genome Atlas Data Integration

Description

Function restores codes and counts for each cohort from TCGA project.

Usage

infoTCGA()

Value

A list with a tabular information from http://gdac.broadinstitute.org/.

Issues

If you have any problems, issues or think that something is missing or is not clear please post an issue on https://github.com/RTCGA/RTCGA/issues.

Author(s)

Marcin Kosinski, [e-mail]

See Also

RTCGA website http://rtcga.github.io/RTCGA/Download.html.

Other RTCGA: RTCGA-package, boxplotTCGA, checkTCGA, convertTCGA, datasetsTCGA, downloadTCGA, expressionsTCGA, heatmapTCGA, installTCGA, kmTCGA, mutationsTCGA, pcaTCGA, readTCGA, survivalTCGA, theme_RTCGA

Examples

infoTCGA()
library(magrittr)
(cohorts <- infoTCGA() %>% 
rownames() %>% 
   sub('-counts', '', x=.))
   
# in knitr chunk -> results='asis'   
knitr::kable(infoTCGA())

RTCGA documentation built on Nov. 8, 2020, 5:11 p.m.