trim: Compute the replicate mean with trimmed values

In RNAither: Statistical analysis of high-throughput RNAi screens

Description

Computes the mean of replicate values, omitting the highest and the lowest 5

Usage

trim(Ivec, na.rm = T)

Arguments

Ivec	All channel values for a specific siRNA/gene
na.rm	Removes NA values

Value

A double giving the trimmed mean of the given replicate values, i.e. omitting the highest and the lowest 5

See Also

rms, closestToZero, furthestFromZero, summarizeReps, summarizeRepsNoFiltering

Examples

data(exampleHeader, package="RNAither")
data(exampleDataset, package="RNAither")

Indexes <- findReplicates(dataset, "GeneName", "CPSF1")
replicatemean <- trim(dataset$SigIntensity[Indexes])

RNAither documentation built on Nov. 8, 2020, 8:06 p.m.