modulePhenotypeCorrelations: modulePhenotypeCorrelations
In ProCoNA: Protein co-expression network analysis (ProCoNA).

Description Usage Arguments Value Author(s) Examples

Computes the relation between the modules and the phenotypes.

1	modulePhenotypeCorrelations(pnet, phenotypes)

`pnet`	The peptide net object
`phenotypes`	The matrix of traits

returns a matrix of correlations between modules and phenotypes.

David L Gibbs

data(ProCoNA_Data)
#net1 <- buildProconaNetwork("peptide network", peptideData, pow=13)
n <- length(samples(net1))
phenotypes <- matrix(rnorm(10*n), nrow=60)
m <- modulePhenotypeCorrelations(net1, phenotypes)

# To plot the heatmap: 
# moduleCors <- correlationWithPhenotypesHeatMap(net1, phenotypes, modules = 1:5, 
#    plot = NULL, title = "Module-trait relationships", textSize = 0.5)