API for ProCoNA
Protein co-expression network analysis (ProCoNA).

Global functions
MEs	Man page
MEs,proconaNet-method	Man page
MEs<-	Man page
MEs<-,proconaNet-method	Man page
MMvsPS	Man page
MMvsPS,proconaNet,matrix,numeric,numeric-method	Man page
MMvsPSallModules	Man page
MMvsPSallModules,proconaNet,matrix,numeric,character-method	Man page
TOM	Man page
TOM,proconaNet-method	Man page
TOM<-	Man page
TOM<-,proconaNet-method	Man page
adj	Man page
adj,proconaNet-method	Man page
adj<-	Man page
adj<-,proconaNet-method	Man page
bootstrapProconaNetwork	Man page Source code
buildProconaNetwork	Man page Source code
c2i	Man page Source code
check_proconaNet	Source code
colorOrder	Man page Man page
colorOrder,proconaNet-method	Man page Man page
colorOrder<-	Man page Man page
colorOrder<-,proconaNet-method	Man page Man page
compareNetworksWithFishersExactTest	Man page
compareNetworksWithFishersExactTest,character,character,numeric,	Man page
compareNetworksWithFishersExactTestProcona	Man page
compareNetworksWithFishersExactTestProcona,proconaNet,proconaNet	Man page
corBootstrap	Man page Source code
correlationWithPhenotypesHeatMap	Man page
correlationWithPhenotypesHeatMap,proconaNet,matrix,numeric,chara	Man page
dynamicColors	Man page
dynamicColors,proconaNet-method	Man page
dynamicColors<-	Man page
dynamicColors<-,proconaNet-method	Man page
getFisherMatrix	Man page
getFisherMatrix,character,character,numeric,numeric-method	Man page
getPeptideNAs	Man page Source code
goStatTest	Man page
goStatTest,proconaNet,numeric,data.frame,character,character,cha	Man page
hclust-class	Man page
i2c	Man page Source code
i2col	Man page Source code
masstagdb	Man page
mergedColors	Man page
mergedColors,proconaNet-method	Man page
mergedColors<-	Man page
mergedColors<-,proconaNet-method	Man page
mergedMEs	Man page
mergedMEs,proconaNet-method	Man page
mergedMEs<-	Man page
mergedMEs<-,proconaNet-method	Man page
moduleMemberCorrelations	Man page
moduleMemberCorrelations,proconaNet,matrix,matrix-method	Man page
modulePhenotypeCorrelations	Man page
modulePhenotypeCorrelations,proconaNet,matrix-method	Man page
net1	Man page
net2	Man page
networkName	Man page
networkName,proconaNet-method	Man page
networkName<-	Man page
networkName<-,proconaNet-method	Man page
networkPower	Man page
networkPower,proconaNet-method	Man page
networkPower<-	Man page
networkPower<-,proconaNet-method	Man page
networkType	Man page
networkType,proconaNet-method	Man page
networkType<-	Man page
networkType<-,proconaNet-method	Man page
orderMatrixIndex	Man page Source code
pepTree	Man page
pepTree,proconaNet-method	Man page
pepTree<-	Man page
pepTree<-,proconaNet-method	Man page
pepnet	Man page
pepnet-class	Man page
peptideConnectivityTest	Man page
peptideConnectivityTest,proconaNet,data.frame,character,characte	Man page
peptideCorrelationTest	Man page
peptideCorrelationTest,matrix,data.frame,character,character-met	Man page
peptideData	Man page
peptides	Man page
peptides,proconaNet-method	Man page
peptides<-	Man page
peptides<-,proconaNet-method	Man page
permtest	Man page
permtest,proconaNet-method	Man page
permtest<-	Man page
permtest<-,proconaNet-method	Man page
phenotypes	Man page
plotNet	Man page Source code
power	Man page
power,proconaNet-method	Man page
power<-	Man page
power<-,proconaNet-method	Man page
ppiPermTest	Man page
ppiPermTest,proconaNet,matrix,data.frame,character,character,dat	Man page
print,proconaNet-method	Man page
printNet	Man page Source code
procona-package	Man page
proconaNet	Man page
proconaNet-class	Man page
proconaVersion	Man page
proconaVersion,proconaNet-method	Man page
proconaVersion<-	Man page
proconaVersion<-,proconaNet-method	Man page
proconaVersionFun	Man page Source code
runningStats	Man page Source code
samples	Man page Man page
samples,proconaNet-method	Man page
samples,proconaNet-methods	Man page
samples<-	Man page Man page
samples<-,proconaNet-method	Man page
samples<-,proconaNet-methods	Man page
show,proconaNet-method	Man page
subsetModCors	Man page Source code
subsetPeptideData	Man page Source code
toPermTest	Man page
toPermTest,proconaNet,numeric-method	Man page
universe	Man page
utri	Man page Source code