createVariableDistributionDataSubset: Create data for additional variable distribution (for a...
In PhyloProfile: PhyloProfile

Description Usage Arguments Value Author(s) See Also Examples

Create data for additional variable distribution (for a subset data)

1 2	createVariableDistributionDataSubset(fullProfileData, distributionData, selectedGenes, selectedTaxa)

`fullProfileData`	dataframe contains the full processed profiles (see ?fullProcessedProfile, ?filterProfileData or ?fromInputToProfile)
`distributionData`	dataframe contains the full distribution data (see ?createVariableDistributionData)
`selectedGenes`	list of genes of interest. Default = "all".
`selectedTaxa`	list of taxa of interest Default = "all".

A dataframe for analysing the distribution of the additional variable(s) for a subset of genes and/or taxa containing the protein (ortholog) IDs and the values of their variables (var1 and var2).

Vinh Tran tran@bio.uni-frankfurt.de

parseInfoProfile, createVariableDistributionData, fullProcessedProfile, mainLongRaw

data("fullProcessedProfile", package="PhyloProfile")
data("mainLongRaw", package="PhyloProfile")
distributionData <- createVariableDistributionData(
    mainLongRaw, c(0, 1), c(0.5, 1)
)
selectedGenes <- "100136at6656"
selectedTaxa <- c("Mammalia", "Saccharomycetes", "Insecta")
createVariableDistributionDataSubset(
    fullProcessedProfile,
    distributionData,
    selectedGenes,
    selectedTaxa
)