phyloseq_to_edgeR: Convert phyloseq OTU count data into DGEList for edgeR...

In PathoStat: PathoStat Statistical Microbiome Analysis Package

Description

Further details.

Usage

phyloseq_to_edgeR(physeq, group, method = "RLE", ...)

Arguments

physeq	(Required).
group	(Required). A character vector or factor giving the experimental group/condition for each sample/library.
method	(Optional).
...	Additional arguments passed on to

Value

dispersion

Examples

data_dir_test <- system.file("data", package = "PathoStat")
pstat_test <- loadPstat(indir=data_dir_test,
infileName="pstat_data_2_L1.rda")
phyloseq_to_edgeR(pstat_test, group="Sex")

PathoStat documentation built on Nov. 8, 2020, 5:28 p.m.