getGenomeAlignment-deprecated: Get Whole Genome Alignment Function
In OmaDB: R wrapper for the OMA REST API
Description
Usage
Arguments
Value
See Also
Description
This function should no longer be used. Use instaed getGenomePairs.
Usage
1
2
getGenomeAlignment(genome1, genome2, chr1 = NULL, chr2 = NULL,
rel_type = NULL)
Arguments
genome_id1
an identifier for the first genome, which can be either its taxon id or UniProt species code
genome_id2
an an identifier for the second genome, which can be either its taxon id or UniProt species code
chr1
the chromosome of interest for the first genome
chr2
the chromosome of interest for the second genome
rel_type
the pairs relationship type
per_page
the number of instances to be returned or 'all'. default is set to a 100.
Value
a dataframe containing information about both the entries in the orthologous pair and their relationship
See Also
OmaDB documentation built on Nov. 13, 2020, 2 a.m.
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Description Usage Arguments Value See Also
Description
This function should no longer be used. Use instaed getGenomePairs.
Usage
1 2 | getGenomeAlignment(genome1, genome2, chr1 = NULL, chr2 = NULL,
rel_type = NULL)
|
Arguments
genome_id1 |
an identifier for the first genome, which can be either its taxon id or UniProt species code |
genome_id2 |
an an identifier for the second genome, which can be either its taxon id or UniProt species code |
chr1 |
the chromosome of interest for the first genome |
chr2 |
the chromosome of interest for the second genome |
rel_type |
the pairs relationship type |
per_page |
the number of instances to be returned or 'all'. default is set to a 100. |
Value
a dataframe containing information about both the entries in the orthologous pair and their relationship
See Also
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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