setupRawContrastObject: Prepare SummarizedExperiment object for statistics data
In NormalyzerDE: Evaluation of normalization methods and calculation of differential expression analysis statistics
Description
Usage
Arguments
Value
Examples
View source: R/inputVerification.R
Description
Prepare SummarizedExperiment object for statistics data
Usage
1
setupRawContrastObject(dataPath, designPath, sampleColName)
Arguments
dataPath
Path to raw data matrix
designPath
Path to design matrix
sampleColName
Name for column in design matrix containing sample names
Value
experimentObj Prepared instance of SummarizedExperiment
Examples
1
2
3
data_path <- system.file(package="NormalyzerDE", "extdata", "tiny_data.tsv")
design_path <- system.file(package="NormalyzerDE", "extdata", "tiny_design.tsv")
sumExpObj <- setupRawContrastObject(data_path, design_path, "sample")
NormalyzerDE documentation built on Nov. 8, 2020, 8:22 p.m.
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Description Usage Arguments Value Examples
View source: R/inputVerification.R
Description
Prepare SummarizedExperiment object for statistics data
Usage
1 | setupRawContrastObject(dataPath, designPath, sampleColName)
|
Arguments
dataPath |
Path to raw data matrix |
designPath |
Path to design matrix |
sampleColName |
Name for column in design matrix containing sample names |
Value
experimentObj Prepared instance of SummarizedExperiment
Examples
1 2 3 | data_path <- system.file(package="NormalyzerDE", "extdata", "tiny_data.tsv")
design_path <- system.file(package="NormalyzerDE", "extdata", "tiny_design.tsv")
sumExpObj <- setupRawContrastObject(data_path, design_path, "sample")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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