mergeSCE: Merge multiple SingleCellExperiment objects.

In MetaNeighbor: Single cell replicability analysis

Description

Merge multiple SingleCellExperiment objects.

Usage

mergeSCE(sce_list)

Arguments

sce_list

A *named* list, where values are SingleCellExperiment objects and names are SingleCellExperiment objects.

Value

A SingleCellExperiment object containing the input datasets with the following limitations: (i) only genes common to all datasets are kept, (ii) only colData columns common to all datasets are kept, (iii) only assays common to all datasets (i.e., having the same name) are kept, (iv) all other slots (e.g., reducedDims or rowData) will be ignored and left empty. The SingleCellExperiment object contains a "study_id" column, mapping each cell to its original dataset (names in "sce_list").

MetaNeighbor documentation built on Nov. 8, 2020, 5:40 p.m.