QuiCDIA: DIA iRT data from QuiC System

In MSstatsQC: Longitudinal system suitability monitoring and quality control for proteomic experiments

Description

QC results generated from QuiC system

Usage

data(QuiCDIA)

Format

csv

Details

DIA iRT data from QuiC System

Value

An example dataset generated from QuiC system

Examples

head(QuiCDIA)

Example output

                                 Run Analysis.Date        AcquiredTime
1 B_D131218_SGSDSsample2_R01_MHRM_T0  3/5/18 15:54 19/12/2013 19:29:05
2 B_D131218_SGSDSsample6_R01_MHRM_T0  3/5/18 16:42 20/12/2013 03:10:50
3 B_D131218_SGSDSsample1_R01_MHRM_T0  3/5/18 18:10 20/12/2013 08:17:38
4 B_D131218_SGSDSsample4_R01_MHRM_T0  3/5/18 17:12 20/12/2013 13:23:07
5 B_D131218_SGSDSsample5_R01_MHRM_T0  3/5/18 17:01 20/12/2013 18:28:48
6 B_D131218_SGSDSsample8_R01_MHRM_T0  3/5/18 16:10 20/12/2013 21:01:52
      Precursor Annotations PPM.MS1.Mass.Shift PPM.MS2.Mass.Shift
1 ADVTPADFSEWSK          NA          -4.885541          -7.365751
2 ADVTPADFSEWSK          NA          -4.036631          -6.289878
3 ADVTPADFSEWSK          NA          -4.739710          -6.622973
4 ADVTPADFSEWSK          NA          -4.670613          -7.045352
5 ADVTPADFSEWSK          NA          -4.510880          -6.606321
6 ADVTPADFSEWSK          NA          -4.585229          -6.747504
  MS2.m.z.Accuracy.before.Calibration MS2.m.z.Precision.after.Calibration
1                            8.345381                            4.478569
2                            7.527433                            4.562437
3                            7.768215                            4.408634
4                            8.043408                            4.505240
5                            7.702991                            4.484911
6                            7.780763                            4.487567
  MS1.m.z.Accuracy.before.Calibration MS1.m.z.Precision.after.Calibration
1                            8.496969                            7.032465
2                            8.084025                            7.037899
3                            8.327224                            6.931957
4                            8.156727                            6.889768
5                            8.126557                            6.892295
6                            8.555221                            7.172378
  Delta.iRT DeltaRetentionTime      FWHM iRT.Empirical MS1.Quantity
1 -2.856719          -2.408057 0.1780021      50.44328     1.12e+07
2 -3.279001          -2.530452 0.2176553      50.02100     5.99e+07
3 -2.693029          -2.429044 0.2694982      50.60697     7.10e+07
4 -3.276173          -2.483351 0.2715103      50.02383     1.03e+08
5 -3.127798          -2.483353 0.2483544      50.17220     6.46e+07
6 -2.560704          -2.314785 0.2942438      50.73930     7.12e+07
  Total.Peak.Area.Target PPM.MS2.Mass.Shift.iRT.only Gradient.Length
1                1483463                   -8.035691          129.90
2               10100000                   -1.790211          129.89
3               12400000                   -3.100043          129.85
4               18200000                   -2.231517          129.91
5               10900000                   -1.524215          129.89
6               12000000                   -2.735857          129.87
  MS1.Median.Intensity R_TIC_Intensities_Median Total.Fragment.Intensity
1             3.14e+08                 2.34e+08                 1.55e+08
2             2.95e+08                 2.17e+08                 1.53e+08
3             2.60e+08                 1.85e+08                 1.33e+08
4             3.29e+08                 2.52e+08                 1.64e+08
5             2.39e+08                 1.73e+08                 1.26e+08
6             3.00e+08                 2.09e+08                 1.59e+08
  MS2.Median.Intensity Peak.Capacity.Kit.Peptides Peak.Capacity.All.Peptides
1             1.28e+08                     336.26                     366.60
2             1.25e+08                     269.23                     370.46
3             1.08e+08                     256.58                     364.27
4             1.38e+08                     240.15                     366.00
5             1.04e+08                     250.35                     363.63
6             1.22e+08                     242.39                     374.12
  R_TIC_RTs Identified.Protein.Groups Identified.Precursors
1  64.10369                      2837                 22555
2  64.12598                      2836                 22873
3  64.22295                      2816                 22269
4  64.03658                      2832                 22725
5  64.25903                      2797                 22528
6  64.23189                      2794                 22361
  Identified.Protein.Groups..Normalized. Identified.Precursors..Normalized.
1                                   2837                              22555
2                                   2836                              22873
3                                   2816                              22269
4                                   2832                              22725
5                                   2797                              22528
6                                   2794                              22361

MSstatsQC documentation built on Nov. 8, 2020, 5:30 p.m.