Man pages for MIGSA
Massive and Integrative Gene Set Analysis
| bcMigsaRes | A MIGSA results object obtained from breast cancer data |
| ExprData-class | ExprData S4 class implementation in R |
| FitOptions-class | FitOptions S4 class implementation in R |
| Genesets-as.Genesets | Creates a GeneSetCollection from a list |
| Genesets-enrichr | List and download gene sets from enrichr database |
| Genesets-geneSetsFromFile | Creates a GeneSetCollection object from a file |
| Genesets-loadGo | Creates a GeneSetCollection object using the Gene Ontology... |
| GSEAparams-class | GSEAparams S4 class implementation in R |
| IGSAinput-class | IGSAinput S4 class implementation in R |
| IGSAinput-getDEGenes | Calculate differentialy expressed genes of an IGSAinput... |
| IGSAinput-getterSetters | Accessors for IGSAinput class |
| MIGSA | MIGSA execution |
| MIGSAmGSZ | MIGSAmGSZ |
| MIGSAPackage | MIGSA package |
| migsaRes | A MIGSA results object (MIGSAres) example |
| MIGSAres-class | MIGSAres S4 class implementation in R |
| MIGSAres-common | MIGSAres exploratory functions |
| MIGSAres-genesManipulation | Get or edit MIGSAres with/by genes that contributed to... |
| MIGSAres-getAdditionalInfo | Gets additional information about enrichment results |
| MIGSAres-GoAnalysis | Explore Gene Ontology gene sets in MIGSAres |
| MIGSAres-plots | MIGSAres plots |
| MIGSAres-setEnrCutoff | Set enrichment cutoff for a MIGSAres object |
| SEAparams-class | SEAparams S4 class implementation in R |
| summaryFunctions | Summary functions for some MIGSA classes |
