scores: Retrieves the scores from a MAIT object

In MAIT: Statistical Analysis of Metabolomic Data

Description

Function scores extracts the scores MAIT object

Usage

scores(object,
       type,...)

Arguments

object	A MAIT-class object
type	If it is set to "none", the peak aggregation models are returned. If it is set to "PCA", the PCA model is returned. If it is set to "PLS", the PCA model is returned.
...	Other input

Value

A numeric matrix containing the scores saved in the MAIT object

Author(s)

Francesc Fernandez, [e-mail]

See Also

MAIT-class

Examples

data(MAIT_sample)
MAIT<-spectralSigFeatures(MAIT,p.adj="fdr",parametric=TRUE)
scores(MAIT)

MAIT<-plotPCA(MAIT,plot3d=FALSE)
scores(MAIT,type="PCA")

MAIT<-plotPLS(MAIT,plot3d=FALSE)
scores(MAIT,type="PLS")

MAIT documentation built on Nov. 8, 2020, 5:43 p.m.