L1_DRG_20_example: L1_DRG_20_example.loom

In LoomExperiment: LoomExperiment container

Description

An example hdf5 file in the Loom file format obtained from the Linnarson Lab.

The original file was imported using LoomExperiment and truncated using the package's subsetting methods. The purpose of this truncation was to reduce the total size of the data as the file's purpose is simply to demonstrate LoomExperiment's functionality.

The data set has dimensions of 20x20. The file contains 7 rowData and 103 colData entries each corresponding to readings generated by high-throughput sequencing experiments. In addition, a colGraphs entry encoding aLoomGraph containing two LoomGraph objects are also included.

Format

An hdf5 file in the Loom format

Examples

## Load L1_DRG_20_example.loom using LoomExperiment's import() method
l1_file <- system.file("extdata", "L1_DRG_20_example.loom", package = "LoomExperiment")
scle <- import(l1_file, type="SingleCellLoomExperiment")
scle

LoomExperiment documentation built on Nov. 8, 2020, 5:41 p.m.