Replop-package: LEA: an R package for Landscape and Ecological Associations...
In LEA: LEA: an R package for Landscape and Ecological Association Studies
Description
LEA is an R package dedicated to landscape genomics and ecological association
tests. LEA can run analyses of population structure and genome scans for local
adaptation. It includes statistical methods for estimating ancestry
coefficients from large genotypic matrices and evaluating the number of
ancestral populations (snmf, pca) and identifying genetic polymorphisms that
exhibit high correlation with some environmental gradient or with the variables
used as proxies for ecological pressures (lfmm). LEA is mainly based on
optimized C programs that can scale with the dimension of very large data sets.
Details
Package: LEA
Type: Package
Version: 2.0
Date: 2017-07-16
License: GPL-3
Author(s)
Eric Frichot
Olivier Francois
Maintainer: Olivier Francois <olivier.francois@grenoble-inp.fr>
LEA documentation built on Nov. 8, 2020, 8:19 p.m.
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Description
LEA is an R package dedicated to landscape genomics and ecological association tests. LEA can run analyses of population structure and genome scans for local adaptation. It includes statistical methods for estimating ancestry coefficients from large genotypic matrices and evaluating the number of ancestral populations (snmf, pca) and identifying genetic polymorphisms that exhibit high correlation with some environmental gradient or with the variables used as proxies for ecological pressures (lfmm). LEA is mainly based on optimized C programs that can scale with the dimension of very large data sets.
Details
| Package: | LEA |
| Type: | Package |
| Version: | 2.0 |
| Date: | 2017-07-16 |
| License: | GPL-3 |
Author(s)
Eric Frichot Olivier Francois Maintainer: Olivier Francois <olivier.francois@grenoble-inp.fr>
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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