expandKEGGPathway: Expand KEGG Pathway
In KEGGgraph: KEGGgraph: A graph approach to KEGG PATHWAY in R and Bioconductor
Description
Usage
Arguments
Details
Value
Author(s)
See Also
Examples
Description
The function expands paralogue nodes in KEGG pathway and returns
expanded KEGG pathway, KEGG node and edge data is maintained.
Usage
1
expandKEGGPathway(pathway)
Arguments
pathway
An object of KEGGPathway-class
Details
The function expands nodes with paralogues in KEGG pathway and copy
neccessary edges.
Value
An object of KEGGPathway-class
Author(s)
Jitao David Zhang mailto:jitao_david.zhang@roche.com
See Also
Examples
1
2
3
sfile <- system.file("extdata/hsa04010.xml",package="KEGGgraph")
kegg.pathway <- parseKGML(sfile)
kegg.expandpathway <- expandKEGGPathway(kegg.pathway)
Example output
KEGGgraph documentation built on Nov. 8, 2020, 5:42 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Details Value Author(s) See Also Examples
Description
The function expands paralogue nodes in KEGG pathway and returns expanded KEGG pathway, KEGG node and edge data is maintained.
Usage
1 | expandKEGGPathway(pathway)
|
Arguments
pathway |
An object of |
Details
The function expands nodes with paralogues in KEGG pathway and copy neccessary edges.
Value
An object of KEGGPathway-class
Author(s)
Jitao David Zhang mailto:jitao_david.zhang@roche.com
See Also
Examples
1 2 3 | sfile <- system.file("extdata/hsa04010.xml",package="KEGGgraph")
kegg.pathway <- parseKGML(sfile)
kegg.expandpathway <- expandKEGGPathway(kegg.pathway)
|
Example output
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.