samplebamfiles: A data frame for example expression bam files.
In IMAS: Integrative analysis of Multi-omics data for Alternative Splicing
Description
Usage
Format
Value
Source
Examples
Description
A path and identifier of bam files for 50 samples. For each bam file, mapped reads were randomly generated that came from the genomic region of chr11: 100,933,178 - 100,996,889. With each simulated bam file of 50 samples, PSI level is calculated for the exon that is located in chr11: 100,962,491-100,962,607. The simulated PSI values are in the range of 0.6 to 1.0. The range of 0.9 to 1.0 of PSI values are assigned to PR-positive group and 0.5 to 0.6 to PR-negative group. The detailed overview of the data is described in the vignette.
Usage
1
data(bamfilestest)
Format
A data frame with paths and identifiers on the 50 samples
Value
A data frame with paths and identifiers on the 50 samples
Source
The data was provided from IMAS
Examples
1
2
data(bamfilestest)
IMAS documentation built on Nov. 8, 2020, 7:48 p.m.
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Description Usage Format Value Source Examples
Description
A path and identifier of bam files for 50 samples. For each bam file, mapped reads were randomly generated that came from the genomic region of chr11: 100,933,178 - 100,996,889. With each simulated bam file of 50 samples, PSI level is calculated for the exon that is located in chr11: 100,962,491-100,962,607. The simulated PSI values are in the range of 0.6 to 1.0. The range of 0.9 to 1.0 of PSI values are assigned to PR-positive group and 0.5 to 0.6 to PR-negative group. The detailed overview of the data is described in the vignette.
Usage
1 | data(bamfilestest)
|
Format
A data frame with paths and identifiers on the 50 samples
Value
A data frame with paths and identifiers on the 50 samples
Source
The data was provided from IMAS
Examples
1 2 | data(bamfilestest)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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