reconstructData: Reconstruct corrected data from Harman results
In Harman: The removal of batch effects from datasets using a PCA and constrained optimisation based technique
Description
Usage
Arguments
Value
See Also
Examples
View source: R/reconstructData.R
Description
Method which reverts the PCA factorisation for instances of
harmanresults. This allows the original or corrected data to be
returned back from the PCA domain into the original data domain.
Usage
1
reconstructData(object, this = "corrected")
Arguments
object
An instance of harmanresults.
this
string, legal values are original or corrected.
Value
matrix of data
See Also
Examples
1
2
3
4
5
6
library(HarmanData)
data(OLF)
expt <- olf.info$Treatment
batch <- olf.info$Batch
olf.harman <- harman(olf.data, expt, batch)
olf.data.corrected <- reconstructData(olf.harman)
Harman documentation built on Nov. 8, 2020, 7:50 p.m.
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Description Usage Arguments Value See Also Examples
View source: R/reconstructData.R
Description
Method which reverts the PCA factorisation for instances of
harmanresults. This allows the original or corrected data to be
returned back from the PCA domain into the original data domain.
Usage
1 | reconstructData(object, this = "corrected")
|
Arguments
object |
An instance of |
this |
string, legal values are |
Value
matrix of data
See Also
Examples
1 2 3 4 5 6 | library(HarmanData)
data(OLF)
expt <- olf.info$Treatment
batch <- olf.info$Batch
olf.harman <- harman(olf.data, expt, batch)
olf.data.corrected <- reconstructData(olf.harman)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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