sultan: RNA-seq data from humans in Sultan et al. (2008)

In HTSFilter: Filter replicated high-throughput transcriptome sequencing data

Description

This dataset represents RNA-seq data from humans in two conditions (Ramos B cell line and HEK293T), with two biological replicates per condition. The ExpressionSet was downloaded from the ReCount online resource.

Usage

data(sultan)

Format

An ExpressionSet named sultan.eset containing the phenotype data and expression data for the Sultan et al. (2008) experiment. Phenotype data may be accessed using the pData function, and expression data may be accessed using the exprs function.

Value

Object of class ‘ExpressionSet’. Matrix of counts can be accessed after loading the ‘Biobase’ package and calling exprs(sultan)).

Source

ReCount online resource (http://bowtie-bio.sourceforge.net/recount).

References

data_blah.com

A. C. Frazee, B. Langmead, and J. T. Leek. ReCount: a multi-experiment resource of analysis-ready RNA-seq gene count datasets. BMC Bioinformatics, 12(449), 2011.

M. Sultan, M. H. Schulz, H. Richard, A. Magen, A. Klingenhoff, M. Scherf, M. Seifert, T. Borodina, A. Soldatov, D. Parkhomchuk, D. Schmidt, S. O'Keefe, S. Haas, M. Vingron, H. Lehrach, and M. L. Yaspo. A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome. Science, 15(5891):956-60, 2008.

HTSFilter documentation built on Dec. 18, 2020, 2 a.m.