HTSFilter: Filter replicated high-throughput transcriptome sequencing data

This package implements a filtering procedure for replicated transcriptome sequencing data based on a global Jaccard similarity index in order to identify genes with low, constant levels of expression across one or more experimental conditions.

Package details

AuthorAndrea Rau [cre, aut] (<https://orcid.org/0000-0001-6469-488X>), Melina Gallopin [ctb], Gilles Celeux [ctb], Florence Jaffrézic [ctb]
Bioconductor views DifferentialExpression GeneExpression ImmunoOncology Normalization Preprocessing RNASeq Sequencing
MaintainerAndrea Rau <andrea.rau@inrae.fr>
LicenseArtistic-2.0
Version1.30.1
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("HTSFilter")

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HTSFilter documentation built on Dec. 18, 2020, 2 a.m.