Ideogram-class: Class "Ideogram", represent an Ideogram
In GenomeGraphs: Plotting genomic information from Ensembl

Description Objects from the Class Slots Methods Author(s) References See Also Examples

An ideogram is a representation of a chromosome containing the banding pattern. Note that currently ideograms are only available for hsapiens.

Objects can be created by calls of the form new("Ideogram", ...).

chromosome:: Object of class "character", representing the chromosome that needs to be drawn. E.g. 3 if chromosome 3 needs to be drawn or Y for Y chromosome.
dp:: Object of class "DisplayPars", can be used to specify the size (default 1) of the ideogram in the final plot and to specify the highlighting color

No methods defined with class "Ideogram" in the signature.

Steffen Durinck

http://www.stat.berkeley.edu/~steffen/

objects to See Also as gdPlot

if(interactive()){
data("exampleData", package="GenomeGraphs")

minbase <- 180292097 
maxbase <- 180492096
ideog <- new("Ideogram", chromosome = "3")
expres <- new("GenericArray", intensity = intensity, probeStart = exonProbePos, 
              dp = DisplayPars(color="darkred", type="point"))
gdPlot(list(ideog, expres), minBase = minbase, maxBase =maxbase)
}