categoryNet: Plot Category Links

In GeneAnswers: Integrated Interpretation of Genes

Description

Function to plot a linkages of specified categories.

Usage

categoryNet(catGenesList, centroidSize=NULL, output=c('fixed','interactive'))

Arguments

catGenesList	a list of categories.
centroidSize	a numeric vector to specify the size of concept nodes. If NULL, all of concept nodes are represented as the same size solid circles.
output	type to specify output figure types.

Details

catGenesList is a list of categories. Each element contains the genes in the corresponding category, respectively. And the names of the list are categories. If centroidSize is a numeric vector, its values are mapped to the categories in the catGenesList sequentially.

Value

A category linkage is generated.

Author(s)

Gang Feng, Pan Du and Simon Lin

References

Feng, G., Du, P., Krett, N., Tessel, M., Rosen, S., Kibbe, W.A. and Lin, S.M., 'A collection of bioconductor methods to visualize gene-list annotations', BMC Research Notes 2010, 3:10

See Also

help

Examples

input <- list('cat1'=c(1,4,2,5), 'cat2'=c(3,5,8,9), 'cat3'=c(2,4,5,9), 'cat4'=c(1,5,3))
## Not run: categoryNet(input)

GeneAnswers documentation built on Nov. 8, 2020, 4:53 p.m.