HLA: HLA region base positions
In GWASTools: Tools for Genome Wide Association Studies

Description Usage Format Source References Examples

HLA region base positions from the GRCh36/hg18, GRCh37/hg19 and GRCh38/hg38 genome builds.

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HLA.hg18
HLA.hg19
HLA.hg38

A data.frame with the following columns.

chrom: chromsome
start.base: starting base position of region
end.base: ending base position of region

UCSC genome browser (http://genome.ucsc.edu).

Mehra, Narinder K. and Kaur, Gurvinder (2003), MHC-based vaccination approaches: progress and perspectives. Expert Reviews in Molecular Medicine, Vol. 5: 24. doi:10.1017/S1462399403005957

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data(HLA.hg18)
data(HLA.hg19)
data(HLA.hg38)

Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, cbind, colMeans, colSums, colnames, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, lengths, mapply, match, mget, order, paste, pmax, pmax.int,
    pmin, pmin.int, rank, rbind, rowMeans, rowSums, rownames, sapply,
    setdiff, sort, table, tapply, union, unique, unsplit, which,
    which.max, which.min

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