readDataId2diseaseCodeMap: Read a mapping between dataset ID and disease code
In GSEABenchmarkeR: Reproducible GSEA Benchmarking

Description Usage Arguments Value Author(s) See Also Examples

When assessing enrichment analysis results for phenotype relevance, it is assumed that each analyzed dataset investigates a certain phenotype such as a disease. This function reads a mapping between dataset IDs and assigned disease codes.

1	readDataId2diseaseCodeMap(map.file)

map.file

Character. The path to the mapping file.

A named character vector where each element of the vector is a disease code and the names are the dataset IDs.

Ludwig Geistlinger <Ludwig.Geistlinger@sph.cuny.edu>

evalRelevance for evaluating phenotype relevance of gene set rankings.

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    data.dir <- system.file("extdata", package="GSEABenchmarkeR")
    d2d.file <- file.path(data.dir, "malacards", "GseId2Disease.txt")
    d2d.map <- readDataId2diseaseCodeMap(d2d.file)