sampleInfo: Sample Information for the Breast Cancer Data from The Cancer...

In GSALightning: Fast Permutation-based Gene Set Analysis

Description

This is the subject information data for the breast cancer expression data set obtained from The Cancer Genome Atlas (TCGA) consortium, and processed by the Pan-Cancer project group. The data was downloaded originally using the ELMER Bioconductor package.

Usage

data("sampleInfo")

Value

A data frame. The element "TN" is the subject label ("Experiment" = cancer patients, and "Control" = the control subjects).

References

The Cancer Genome Atlas (2012) Comprehensive molecular characterization of human colon and rectal cancer. Nature 487:330-337.

Weinstein, John N., et al. "The cancer genome atlas pan-cancer analysis project." Nature genetics 45.10 (2013): 1113-1120.

Yao, L., et al. "Inferring regulatory element landscapes and transcription factor networks from cancer methylomes." Genome biology 16.1 (2015): 105-105.

Examples

data(sampleInfo)
str(sampleInfo)

GSALightning documentation built on Nov. 8, 2020, 11 p.m.